Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 51 curated entries in PaperBLAST's database that match '5.4.2.2' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

glmM CALKRO_RS01125 Calkro_0230 WP_013429299.1: phosphoglucosamine mutase
is similar to:
PaperBLAST

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

36% id,
100% cov

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

32% id,
100% cov

Q8PGN7: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Xanthomonas citri

30% id,
94% cov

More...

CALKRO_RS00500 Calkro_0101 WP_013429174.1: phosphoglucomutase/phosphomannomutase family protein
is similar to:
PaperBLAST

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

32% id,
98% cov

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

28% id,
97% cov

PGM2_YEAST / P37012: Phosphoglucomutase 2; PGM 2; D-glucose-1,6-diphosphate:D-glucose-1-phosphate phosphotransferase; Glucose phosphomutase 2; EC 5.4.2.2 from Saccharomyces cerevisiae
PGM2 / P37012: phosphoglucomutase-2 (EC 5.4.2.2) from Saccharomyces cerevisiae

27% id,
95% cov

More...

CALKRO_RS04810 Calkro_0961 WP_013429964.1: phosphoglucomutase/phosphomannomutase family protein
is similar to:
PaperBLAST

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

31% id,
98% cov

PGM_DROME / Q9VUY9: Phosphoglucomutase 1; PGM; Glucose phosphomutase; EC 5.4.2.2 from Drosophila melanogaster

29% id,
95% cov

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

27% id,
99% cov

More...

CALKRO_RS03115 Calkro_0618 WP_013429661.1: phosphoglucomutase/phosphomannomutase family protein
is similar to:
PaperBLAST

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

30% id,
98% cov

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

30% id,
97% cov

PGM_ECOLI / P36938: Phosphoglucomutase; PGM; Glucose phosphomutase; EC 5.4.2.2 from Escherichia coli
Blu / b0688: phosphoglucomutase (EC 5.4.2.2) from Escherichia coli
pgm / GB|ABB65241.1: phosphoglucomutase; EC 5.4.2.2 from Escherichia coli
pgm / P36938: phosphoglucomutase (EC 5.4.2.2) from Escherichia coli

31% id,
88% cov

More...

CALKRO_RS11835 Calkro_2345 WP_013431238.1: sugar phosphate nucleotidyltransferase
is similar to:
PaperBLAST

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

24% id,
82% cov

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

25% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory