Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 6 curated entries in PaperBLAST's database that match '6.1.1.24' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

gltX CALKRO_RS01975 Calkro_0391 WP_013429449.1: glutamate--tRNA ligase
is similar to:
PaperBLAST

gltX / P22250: glutamyl-tRNAGlx synthetase (EC 6.1.1.17; EC 6.1.1.24) from Bacillus subtilis

53% id,
99% cov

Q9X2I8: glutamate-tRNAGln ligase (EC 6.1.1.24) from Thermotoga maritima

43% id,
93% cov

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

36% id,
97% cov

More...

gltX CALKRO_RS08745 Calkro_1732 WP_013430673.1: glutamate--tRNA ligase
is similar to:
PaperBLAST

Q9X2I8: glutamate-tRNAGln ligase (EC 6.1.1.24) from Thermotoga maritima

46% id,
95% cov

gltX / P22250: glutamyl-tRNAGlx synthetase (EC 6.1.1.17; EC 6.1.1.24) from Bacillus subtilis

41% id,
99% cov

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

36% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1890549-1892066 (frame +3) on NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence
is similar to:
PaperBLAST

Q9X2I8: glutamate-tRNAGln ligase (EC 6.1.1.24) from Thermotoga maritima
Also see hits to annotated proteins above

45% id,
96% cov

Q8IDD3: glutamate-tRNAGln ligase (EC 6.1.1.24) from Plasmodium falciparum
Also see hits to annotated proteins above

34% id,
85% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory