Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 22 curated entries in PaperBLAST's database that match '6.3.4.5' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

CALKRO_RS07345 Calkro_1451 WP_013430408.1: argininosuccinate synthase
is similar to:
PaperBLAST

A4I066: argininosuccinate synthase (EC 6.3.4.5) from Leishmania infantum

60% id,
96% cov

H9BG20: argininosuccinate synthase (EC 6.3.4.5) from Leishmania donovani

60% id,
96% cov

ASSY_THET8 / P59846: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermus thermophilus

56% id,
99% cov

More...

mnmA CALKRO_RS05025 Calkro_1003 WP_013429992.1: tRNA 2-thiouridine(34) synthase MnmA
is similar to:
PaperBLAST

Q2Z0F6: argininosuccinate synthase (EC 6.3.4.5) from Agaricus bisporus

26% id,
42% cov

ASSY_HUMAN / P00966: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Homo sapiens
ASS1 / P00966: Argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens
P00966: argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens

27% id,
28% cov

ASSY_RAT / P09034: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Rattus norvegicus

27% id,
28% cov

More...

queC CALKRO_RS12015 Calkro_2381 WP_013431272.1: 7-cyano-7-deazaguanine synthase QueC
is similar to:
PaperBLAST

ASSY_MOUSE / P16460: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Mus musculus
P16460: argininosuccinate synthase (EC 6.3.4.5) from Mus musculus

29% id,
27% cov

ASSY_BOVIN / P14568: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Bos taurus

29% id,
27% cov

ASSY_HUMAN / P00966: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Homo sapiens
ASS1 / P00966: Argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens
P00966: argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens

28% id,
27% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory