Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 7 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase large subunit' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

leuC CALKRO_RS02690 Calkro_0531 WP_013429581.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

39% id,
87% cov

leuC / ECOCYC|LEUC-MONOMER: 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 from Escherichia coli

31% id,
98% cov

LEUC_MYCBO / Q7TXH6: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

31% id,
62% cov

More...

CALKRO_RS10670 Calkro_2109 WP_013431026.1: aconitate hydratase
is similar to:
PaperBLAST

LEUC_MYCBO / Q7TXH6: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

32% id,
98% cov

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

31% id,
86% cov

leuC / CAD19516.1: 3-isopropylmalate dehydratase large subunit, partial from Rhizobium etli

28% id,
93% cov

More...

leuD CALKRO_RS02695 Calkro_0532 WP_013402599.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC 4.2.1.33 from Glarea lozoyensis

36% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory