Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 3 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuC' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

leuC CALKRO_RS02690 Calkro_0531 WP_013429581.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

DVU2982: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

56% id,
99% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

31% id,
98% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

48% id,
27% cov

CALKRO_RS10670 Calkro_2109 WP_013431026.1: aconitate hydratase
is similar to:
PaperBLAST

DVU2982: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

37% id,
100% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

27% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory