Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

CMTB2_RS07100 CMTB2_06391 WP_007475110.1: homoserine dehydrogenase is similar to:	PaperBLAST
DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae	45% id, 99% cov
D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	43% id, 98% cov
Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis	43% id, 95% cov
DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Bacillus subtilis P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis	40% id, 98% cov
DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris	40% id, 95% cov
DHOM_CORGL / P08499: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Corynebacterium glutamicum P08499: homoserine dehydrogenase (EC 1.1.1.3) from Corynebacterium glutamicum	39% id, 96% cov
DHOM_LACLC / P52985: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Lactococcus lactis	37% id, 99% cov
Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus	37% id, 96% cov
P46806: homoserine dehydrogenase (EC 1.1.1.3) from Mycobacterium leprae	36% id, 98% cov
A0A0H2WVX4: homoserine dehydrogenase (EC 1.1.1.3) from Staphylococcus aureus	39% id, 86% cov
Q56R01: homoserine dehydrogenase (EC 1.1.1.3) from Streptomyces clavuligerus	33% id, 98% cov
F9VNG5: homoserine dehydrogenase (EC 1.1.1.3) from Sulfurisphaera tokodaii	32% id, 99% cov
D8WXQ2: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	34% id, 90% cov
O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii	29% id, 97% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	39% id, 47% cov
C1G1C3: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides brasiliensis	25% id, 67% cov
C1GTZ6: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides lutzii	25% id, 67% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	26% id, 42% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	27% id, 38% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	27% id, 39% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	26% id, 38% cov
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	31% id, 30% cov
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	36% id, 21% cov
More...

CMTB2_RS04000 CMTB2_00569 WP_007474201.1: aspartate kinase is similar to:	PaperBLAST
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	44% id, 54% cov
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	33% id, 45% cov
BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron	32% id, 42% cov
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	32% id, 42% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	31% id, 41% cov
MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli	24% id, 50% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	27% id, 44% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	27% id, 42% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	27% id, 42% cov
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	43% id, 6% cov
More...

pyrH CMTB2_RS01745 CMTB2_03123 WP_007473439.1: UMP kinase is similar to:	PaperBLAST
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	24% id, 17% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	32% id, 11% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	24% id, 14% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	28% id, 12% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	27% id, 12% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory