Curated BLAST for Genomes

 

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 14 curated entries in PaperBLAST's database that match '1.1.1.71' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

fabG CMTB2_RS01640 CMTB2_03023 WP_007473398.1: 3-oxoacyl-ACP reductase FabG
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

31% id,
91% cov

CMTB2_RS04580 CMTB2_01194 WP_007474398.1: enoyl-ACP reductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

26% id,
78% cov

CMTB2_RS03495 CMTB2_07301 WP_007474013.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

24% id,
50% cov

CMTB2_RS05650 CMTB2_08007 WP_007474687.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

21% id,
51% cov

CMTB2_RS05305 CMTB2_05292 WP_007474598.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

29% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory