Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

CMTB2_RS00200 CMTB2_01553 WP_007472829.1: serine hydroxymethyltransferase is similar to:	PaperBLAST
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni	69% id, 100% cov
P56089: glycine hydroxymethyltransferase (EC 2.1.2.1) from Helicobacter pylori	68% id, 99% cov
R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae	60% id, 99% cov
GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica P0A2E1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Salmonella enterica	60% id, 99% cov
GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli glyA / RF\|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli	60% id, 99% cov
PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens	59% id, 98% cov
GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus	58% id, 98% cov
L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida	58% id, 98% cov
glyA / P77962: glycine hydroxymethyltransferase (EC 2.1.2.1) from Synechocystis sp.	59% id, 96% cov
GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus Q5SI56: glycine hydroxymethyltransferase (EC 2.1.2.1) from Thermus thermophilus	59% id, 97% cov
B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia	57% id, 98% cov
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus	59% id, 95% cov
A8GTI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Rickettsia rickettsii	56% id, 98% cov
GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis	56% id, 98% cov
I7H6W6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Aphanothece halophytica	58% id, 96% cov
A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei	56% id, 98% cov
A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii	59% id, 92% cov
GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri Q46A52: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanosarcina barkeri	56% id, 98% cov
glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum	57% id, 95% cov
Q5M0B4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Streptococcus thermophilus	55% id, 98% cov
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei	55% id, 98% cov
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis P9WGI7: glycine hydroxymethyltransferase (EC 2.1.2.1) from Mycobacterium tuberculosis	54% id, 97% cov
U5TRK6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Glutamicibacter nicotianae	53% id, 96% cov
GLYA1_MYCTU / P9WGI9: Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1 from Mycobacterium tuberculosis P9WGI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Mycobacterium tuberculosis	54% id, 94% cov
GLYC4_ARATH / O23254: Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1 from Arabidopsis thaliana	44% id, 96% cov
Q86LS9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Leishmania donovani	46% id, 91% cov
GLYA_PLAF7 / Q8I566: Serine hydroxymethyltransferase; PfSHMTc; EC 2.1.2.1 from Plasmodium falciparum	45% id, 94% cov
GLYC_RABIT / P07511: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Oryctolagus cuniculus	47% id, 88% cov
GLYC_SHEEP / P35623: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Ovis aries	46% id, 88% cov
GLYC_MOUSE / P50431: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	46% id, 90% cov
Q7SXN1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Danio rerio	45% id, 89% cov
GLYC_HUMAN / P34896: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT1 / P34896: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Homo sapiens	45% id, 89% cov
GLYM_HUMAN / P34897: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT2 / P34897: serine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens P34897: glycine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens	47% id, 86% cov
GLYC_BOMMO / Q2F5L3: Serine hydroxymethyltransferase; SHMT; Glycine hydroxymethyltransferase; Serine methylase; bmSHMT; EC 2.1.2.1 from Bombyx mori	45% id, 88% cov
A5K8L9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Plasmodium vivax	43% id, 93% cov
G7ILW0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Medicago truncatula	49% id, 80% cov
GLYM_MOUSE / Q9CZN7: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	46% id, 86% cov
GLYC_EREGS / Q75BQ6: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii Q75BQ6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Eremothecium gossypii	43% id, 91% cov
GLYC_YEAST / P37291: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM2 / P37291: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Saccharomyces cerevisiae	43% id, 91% cov
F2QZA4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Komagataella pastoris	44% id, 90% cov
GLYC_CANAL / O13426: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1 from Candida albicans SHM2: serine hydroxymethyltransferase; EC 2.1.2.1 from Candida albicans	43% id, 90% cov
GLYM_YEAST / P37292: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM1 / P37292: serine hydroxymethyltransferase, mitochondrial (EC 2.1.2.1) from Saccharomyces cerevisiae	45% id, 87% cov
GLYM1_ARATH / Q9SZJ5: Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1 from Arabidopsis thaliana SHM1 / Q9SZJ5: serine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	46% id, 82% cov
GLYM_SCHPO / Q10104: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Schizosaccharomyces pombe	44% id, 86% cov
A9LDD9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Danio rerio	43% id, 87% cov
GLYM2_ARATH / Q94C74: Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1 from Arabidopsis thaliana	46% id, 82% cov
SHMT / Q8W4V3: serine hydroxymethyltransferase (EC 2.1.2.1) from Chlamydomonas reinhardtii	46% id, 82% cov
GLYP3_ARATH / Q94JQ3: Serine hydroxymethyltransferase 3, chloroplastic; AtSHM3; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1 from Arabidopsis thaliana Q94JQ3: glycine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	49% id, 75% cov
GLYM_EREGS / Q758F0: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii	42% id, 86% cov
Q58992: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanocaldococcus jannaschii	38% id, 93% cov
Q9UWT5: glycine hydroxymethyltransferase (EC 2.1.2.1) from Saccharolobus solfataricus	33% id, 93% cov
More...

CMTB2_RS07195 CMTB2_04402 WP_007475145.1: LegC family aminotransferase is similar to:	PaperBLAST
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni	30% id, 16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory