Curated BLAST for Genomes

 

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 103 curated entries in PaperBLAST's database that match '2.6.1.1' as complete word(s).

These curated entries have 76 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

CMTB2_RS00685 CMTB2_02043 WP_007473014.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

Q8YMS6: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 51% id,
99% cov

A0A6F8T0V6: aspartate transaminase (EC 2.6.1.1) from Geobacillus sp.

 50% id,
99% cov

aspB / GB|CAB14153.1: aspartate transaminase; EC 2.6.1.1 from Bacillus subtilis

 49% id,
99% cov

More...

CMTB2_RS05655 CMTB2_08012 WP_007474688.1: branched-chain amino acid transaminase
is similar to:		 PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
ilvE / P0AB80: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

 45% id,
96% cov

CMTB2_RS07105 CMTB2_06396 WP_007475111.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

Q8YTF2: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 43% id,
94% cov

Q8YUK5: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 32% id,
100% cov

AAT_SYNY3 / Q55128: Aspartate aminotransferase; AAT; AspAT; EC 2.6.1.1 from Synechocystis sp.

 31% id,
99% cov

More...

hisC CMTB2_RS03835 CMTB2_07646 WP_007474130.1: histidinol-phosphate transaminase
is similar to:		 PaperBLAST

hisC / P17731: histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) from Bacillus subtilis

 34% id,
99% cov

CMTB2_RS07320 CMTB2_04532 WP_007475195.1: alanine--glyoxylate aminotransferase family protein
is similar to:		 PaperBLAST

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

 35% id,
95% cov

CMTB2_RS04230 CMTB2_00804 WP_007474288.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

AAT_THEMA / Q9X0Y2: Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Thermotoga maritima

 32% id,
96% cov

Q8YMS6: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 31% id,
97% cov

A0A6F8T0V6: aspartate transaminase (EC 2.6.1.1) from Geobacillus sp.

 31% id,
97% cov

More...

CMTB2_RS00510 CMTB2_01868 WP_007472961.1: succinyldiaminopimelate transaminase
is similar to:		 PaperBLAST

aspB / GB|CAB14153.1: aspartate transaminase; EC 2.6.1.1 from Bacillus subtilis

 28% id,
93% cov

AAT_THEMA / Q9X0Y2: Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Thermotoga maritima

 28% id,
93% cov

A0A6F8T0V6: aspartate transaminase (EC 2.6.1.1) from Geobacillus sp.

 26% id,
91% cov

More...

CMTB2_RS03335 CMTB2_07136 WP_007473964.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

ARO9 / P38840: aromatic amino acid aminotransferase II (EC 2.6.1.1; EC 2.6.1.58; EC 2.6.1.28) from Saccharomyces cerevisiae

 24% id,
51% cov

atrD / B7STY2: L-tyrosine:2-oxoglutarate aminotransferase (EC 2.6.1.1) from Tapinella panuoides

 29% id,
21% cov

CMTB2_RS00735 CMTB2_02093 WP_007473035.1: cysteine desulfurase family protein
is similar to:		 PaperBLAST

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

 24% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

34086-35195 (frame -3) on NZ_ABCJ01000008.1 Caminibacter mediatlanticus TB-2 1103207000257, whole genome shotgun sequence
is similar to:		 PaperBLAST

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii
Also see hits to annotated proteins above

 35% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory