Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

speA CMTB2_RS03735 CMTB2_07546 WP_007474095.1: biosynthetic arginine decarboxylase is similar to:	PaperBLAST
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	61% id, 99% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	59% id, 99% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	38% id, 98% cov
Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus	34% id, 97% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	33% id, 96% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	35% id, 89% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	32% id, 97% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	32% id, 95% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	32% id, 97% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	34% id, 89% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	31% id, 94% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	30% id, 94% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	31% id, 89% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	30% id, 86% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	31% id, 84% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	33% id, 77% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	30% id, 82% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	33% id, 75% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	34% id, 65% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	33% id, 64% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	32% id, 59% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	31% id, 60% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	30% id, 61% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	32% id, 55% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	33% id, 53% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	35% id, 50% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	34% id, 51% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	33% id, 51% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	35% id, 47% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	34% id, 48% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	39% id, 24% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	47% id, 19% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	36% id, 25% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	34% id, 25% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	33% id, 25% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	32% id, 24% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	36% id, 21% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	34% id, 22% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	48% id, 13% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	46% id, 14% cov
More...

lysA CMTB2_RS03820 CMTB2_07631 WP_007474124.1: diaminopimelate decarboxylase is similar to:	PaperBLAST
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	26% id, 59% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	25% id, 55% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	29% id, 45% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	25% id, 48% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	24% id, 47% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	24% id, 46% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	23% id, 46% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	26% id, 40% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	27% id, 37% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	27% id, 38% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	28% id, 36% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	29% id, 34% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	28% id, 35% cov
Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus	23% id, 43% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	23% id, 43% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	27% id, 36% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	27% id, 36% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	28% id, 35% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	27% id, 35% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	25% id, 38% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	27% id, 34% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	26% id, 36% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	25% id, 36% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	26% id, 34% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	26% id, 35% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	26% id, 34% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	22% id, 38% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	30% id, 21% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory