Curated BLAST for Genomes

 

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 44 curated entries in PaperBLAST's database that match '6.2.1.1' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

acs CMTB2_RS04300 CMTB2_00879 WP_007474311.1: acetate--CoA ligase
is similar to:
PaperBLAST

ACSA_CUPNH / P31638: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Cupriavidus necator
acsA / P31638: acetyl-CoA synthetase (EC 6.2.1.1; EC 6.2.1.17) from Cupriavidus necator

58% id,
98% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

53% id,
98% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

53% id,
98% cov

More...

CMTB2_RS01995 CMTB2_03373 WP_007473537.1: fatty acid--CoA ligase
is similar to:
PaperBLAST

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

28% id,
93% cov

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

29% id,
90% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

26% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

72365-74377 (frame -2) on NZ_ABCJ01000003.1 Caminibacter mediatlanticus TB-2 1103207000282, whole genome shotgun sequence
is similar to:
PaperBLAST

ACSA_CUPNH / P31638: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Cupriavidus necator
acsA / P31638: acetyl-CoA synthetase (EC 6.2.1.1; EC 6.2.1.17) from Cupriavidus necator
Also see hits to annotated proteins above

57% id,
99% cov

facA: acetyl-coenzyme A synthetase; EC 6.2.1.1 from Emericella nidulans
Also see hits to annotated proteins above

49% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory