Curated BLAST for Genomes

 

Curated BLAST

Searching in Caminibacter mediatlanticus TB-2 (GCF_000170735.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caminibacter mediatlanticus TB-2, or try another query

carB CMTB2_RS06680 CMTB2_09190 WP_007474971.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

46% id,
84% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

33% id,
38% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

34% id,
9% cov

CMTB2_RS04330 CMTB2_00919 WP_007474327.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

21% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory