Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter algicola DG893 (GCF_000170835.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Marinobacter algicola DG893, or try another query

tpiA MDG893_RS07300 MDG893_04102 WP_007153106.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans
Q10657: triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans

49% id,
99% cov

Q8MPF2: triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor

48% id,
99% cov

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

48% id,
98% cov

More...

tpiA MDG893_RS19215 MDG893_05219 WP_007155508.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_DROME / P29613: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster

43% id,
98% cov

TPIS_MORMI / P50921: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
tpiA / PDB|1AW1_A: triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
P50921: triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina

43% id,
99% cov

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

43% id,
97% cov

More...

MDG893_RS19950 MDG893_03290 WP_007155652.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

48% id,
60% cov

MDG893_RS17890 MDG893_04949 WP_007155242.1: thiazole synthase
is similar to:
PaperBLAST

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

23% id,
72% cov

TPIS_METBR / O74025: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanobacterium bryantii
O74025: triose-phosphate isomerase (EC 5.3.1.1) from Methanobacterium bryantii

36% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory