Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter algicola DG893 (GCF_000170835.1)

Found 4 curated entries in PaperBLAST's database that match '5.3.3.7' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Marinobacter algicola DG893, or try another query

prpF MDG893_RS04335 MDG893_06034 WP_007152507.1: 2-methylaconitate cis-trans isomerase PrpF
is similar to:
PaperBLAST

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

79% id,
98% cov

prpF MDG893_RS09680 MDG893_14995 WP_007153590.1: 2-methylaconitate cis-trans isomerase PrpF
is similar to:
PaperBLAST

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

71% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory