Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacillus coahuilensis m4-4 (GCF_000171615.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.2.4' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Bacillus coahuilensis m4-4, or try another query

deoC M44_RS14420 WP_029326904.1: deoxyribose-phosphate aldolase
is similar to:		 PaperBLAST

C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.

 71% id,
100% cov

DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis

 72% id,
97% cov

D5AHU8: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis

 67% id,
100% cov

More...

deoC M44_RS11295 WP_010173688.1: deoxyribose-phosphate aldolase
is similar to:		 PaperBLAST

C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.

 70% id,
100% cov

D5AHU8: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis

 70% id,
100% cov

DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis

 70% id,
96% cov

More...

fni M44_RS09670 WP_010173077.1: type 2 isopentenyl-diphosphate Delta-isomerase
is similar to:		 PaperBLAST

DEOC_THET8 / Q5SJ28: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermus thermophilus

 27% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory