Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacillus coahuilensis m4-4 (GCF_000171615.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Bacillus coahuilensis m4-4, or try another query

M44_RS20345 WP_010171359.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

29% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

16945-18096 (frame +1) on NZ_ABFU01000019.3 Bacillus coahuilensis m4-4 1955101000019, whole genome shotgun sequence
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis
Also see hits to annotated proteins above

29% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory