Curated BLAST for Genomes

 

Curated BLAST

Searching in Anaerobutyricum hallii DSM 3353 (GCF_000173975.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Anaerobutyricum hallii DSM 3353, or try another query

ilvB EUBHAL_RS13310 EUBHAL_03019 WP_005351054.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

47% id,
97% cov

ilvB EUBHAL_RS07895 EUBHAL_01782 WP_005347643.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

42% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

27953-29776 (frame +2) on NZ_ACEP01000081.1 Anaerobutyricum hallii DSM 3353 E_hallii-1.0_Cont88.1, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

42% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory