Curated BLAST for Genomes

 

Curated BLAST

Searching in Granulicella mallensis MP5ACTX8 (GCF_000178955.2)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.255' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Granulicella mallensis MP5ACTX8, or try another query

ACIX8_RS04060 AciX8_0817 WP_014264048.1: NAD(P)-dependent alcohol dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

50% id,
94% cov

ACIX8_RS13990 AciX8_2812 WP_014265996.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

28% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

936883-937980 (frame +1) on NC_016631.1 Granulicella mallensis MP5ACTX8, complete sequence
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Also see hits to annotated proteins above

50% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory