Curated BLAST for Genomes

 

Curated BLAST

Searching in Granulicella tundricola MP5ACTX9 (GCF_000178975.2)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Granulicella tundricola MP5ACTX9, or try another query

dapF ACIX9_RS14055 AciX9_2818 WP_013581156.1: diaminopimelate epimerase
is similar to:
PaperBLAST

DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum
Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum

36% id,
98% cov

E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae

34% id,
95% cov

DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis

33% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory