Curated BLAST for Genomes

 

Curated BLAST

Searching in Brucella inopinata BO1 (GCF_000182725.1)

Found 6 curated entries in PaperBLAST's database that match '1.1.3.21' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Brucella inopinata BO1, or try another query

lhgO BIBO1_RS19215 BIBO1_2932 WP_008511261.1: L-2-hydroxyglutarate oxidase
is similar to:
PaperBLAST

glpO: glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides
Q70GP9: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides

30% id,
71% cov

glpD BIBO1_RS10825 BIBO1_1138 WP_008506738.1: glycerol-3-phosphate dehydrogenase
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

35% id,
55% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

30% id,
64% cov

BIBO1_RS18565 BIBO1_2801 WP_008511011.1: glycerol-3-phosphate dehydrogenase
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

34% id,
56% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

34% id,
55% cov

BIBO1_RS18060 BIBO1_2684 WP_008510768.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

22% id,
63% cov

BIBO1_RS17035 BIBO1_2470 WP_008510350.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

25% id,
47% cov

BIBO1_RS18845 BIBO1_2856 WP_008511116.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

41% id,
13% cov

BIBO1_RS12260 BIBO1_1456 WP_008507491.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

glpO: glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides
Q70GP9: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides

38% id,
13% cov

BIBO1_RS18745 BIBO1_2837 WP_008511076.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

35% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory