Curated BLAST for Genomes

 

Curated BLAST

Searching in Brucella inopinata BO1 (GCF_000182725.1)

Found 5 curated entries in PaperBLAST's database that match '4.2.1.12' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Brucella inopinata BO1, or try another query

edd BIBO1_RS18110 BIBO1_2694 WP_004689073.1: phosphogluconate dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

62% id,
99% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

61% id,
99% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

55% id,
98% cov

ilvD BIBO1_RS10395 BIBO1_1046 WP_008506433.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

29% id,
91% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

29% id,
83% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
51% cov

BIBO1_RS18925 BIBO1_2873 WP_002968570.1: IlvD/Edd family dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

30% id,
77% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

26% id,
86% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

26% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory