Curated BLAST for Genomes

 

Curated BLAST

Searching in Paludibacter propionicigenes WB4 (GCF_000183135.1)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paludibacter propionicigenes WB4, or try another query

mdh PALPR_RS13045 Palpr_2611 WP_013446112.1: malate dehydrogenase
is similar to:
PaperBLAST

Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum

40% id,
96% cov

CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis
Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis

39% id,
93% cov

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

37% id,
98% cov

More...

PALPR_RS13895 Palpr_2792 WP_013446290.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

29% id,
37% cov

PALPR_RS04465 Palpr_0903 WP_013444422.1: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

ldh / P78007: L-lactate dehydrogenase (EC 1.1.1.27) from Mycoplasma pneumoniae

28% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory