Curated BLAST for Genomes

 

Curated BLAST

Searching in Paludibacter propionicigenes WB4 (GCF_000183135.1)

Found 17 curated entries in PaperBLAST's database that match '3.1.1.25' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Paludibacter propionicigenes WB4, or try another query

PALPR_RS14955 Palpr_3006 WP_013446503.1: MBL fold metallo-hydrolase
is similar to:
PaperBLAST

P0CJ63: 1,4-lactonase (EC 3.1.1.25); quorum-quenching N-acyl-homoserine lactonase (EC 3.1.1.81) from Bacillus thuringiensis

26% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory