Curated BLAST for Genomes

 

Curated BLAST

Searching in Calditerrivibrio nitroreducens DSM 19672 (GCF_000183405.1)

Found 37 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Calditerrivibrio nitroreducens DSM 19672, or try another query

CALNI_RS02310 Calni_0462 WP_013450590.1: NADP-dependent isocitrate dehydrogenase
is similar to:
PaperBLAST

A0A0M4S9Q1: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter curvus

53% id,
99% cov

J4X756: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter sp.

53% id,
99% cov

leuB CALNI_RS06250 Calni_1247 WP_013451367.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans

36% id,
93% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (subunit 2/2) (EC 1.1.1.41) from Homo sapiens

36% id,
91% cov

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus

36% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory