Curated BLAST for Genomes

 

Curated BLAST

Searching in Calditerrivibrio nitroreducens DSM 19672 (GCF_000183405.1)

Found 11 curated entries in PaperBLAST's database that match '5.1.99.1' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Calditerrivibrio nitroreducens DSM 19672, or try another query

mce CALNI_RS05240 Calni_1046 WP_013451170.1: methylmalonyl-CoA epimerase
is similar to:
PaperBLAST

MCE_PYRHO / O58010: Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Pyrococcus horikoshii

58% id,
96% cov

mcee / A9WGS0: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Chloroflexus aurantiacus

45% id,
99% cov

Msed_0639 / A4YEG2: methylmalonyl-CoA epimerase monomer (EC 5.1.99.1) from Metallosphaera sedula
A4YEG2: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Metallosphaera sedula

44% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory