Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuricurvum kujiense DSM 16994 (GCF_000183725.1)

Found 37 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfuricurvum kujiense DSM 16994, or try another query

SULKU_RS07370 Sulku_1464 WP_013460323.1: NADP-dependent isocitrate dehydrogenase
is similar to:
PaperBLAST

J4X756: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter sp.

50% id,
100% cov

A0A0M4S9Q1: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter curvus

50% id,
100% cov

leuB SULKU_RS04995 Sulku_0987 WP_013459847.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

IDH1_YEAST / P28834: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae
P28834: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae

33% id,
91% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (subunit 2/2) (EC 1.1.1.41) from Homo sapiens

33% id,
89% cov

P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

33% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory