Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuricurvum kujiense DSM 16994 (GCF_000183725.1)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfuricurvum kujiense DSM 16994, or try another query

SULKU_RS05860 Sulku_1163 WP_013460023.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni

73% id,
100% cov

P56089: glycine hydroxymethyltransferase (EC 2.1.2.1) from Helicobacter pylori

68% id,
99% cov

PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

59% id,
98% cov

More...

SULKU_RS13440 Sulku_2669 WP_013449931.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni

63% id,
100% cov

P56089: glycine hydroxymethyltransferase (EC 2.1.2.1) from Helicobacter pylori

62% id,
99% cov

GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis

55% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory