Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuricurvum kujiense DSM 16994 (GCF_000183725.1)

Found 52 curated entries in PaperBLAST's database that match '2.5.1.19' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sulfuricurvum kujiense DSM 16994, or try another query

aroA SULKU_RS04475 Sulku_0882 WP_013459745.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

A6TL04: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Alkaliphilus metalliredigens

45% id,
97% cov

F5A7Q0: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Bacillus cereus

44% id,
96% cov

aroE / P20691: 5-enolpyruvoylshikimate-3-phosphate synthase (EC 2.5.1.19) from Bacillus subtilis

44% id,
96% cov

More...

murA SULKU_RS03460 Sulku_0681 WP_013459544.1: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
is similar to:
PaperBLAST

F5A7Q0: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Bacillus cereus

24% id,
49% cov

aroB SULKU_RS05100 Sulku_1010 WP_013459870.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

39% id,
19% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

33% id,
18% cov

SULKU_RS05840 Sulku_1159 WP_013460019.1: shikimate dehydrogenase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

29% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory