Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuricurvum kujiense DSM 16994 (GCF_000183725.1)

Found 28 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sulfuricurvum kujiense DSM 16994, or try another query

SULKU_RS05885 Sulku_1168 WP_013460028.1: 3-deoxy-7-phosphoheptulonate synthase class II
is similar to:
PaperBLAST

AROG2_PETHY / A0A067XGX8: Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; DAHP synthase 2; PhDAHP2; Phospho-2-keto-3-deoxyheptonate aldolase 2; EC 2.5.1.54 from Petunia hybrida

58% id,
87% cov

P29976: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Arabidopsis thaliana

58% id,
84% cov

A0A0D5ZBC4: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Gossypium hirsutum

57% id,
82% cov

More...

kdsA SULKU_RS01595 Sulku_0312 WP_013459176.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

29% id,
70% cov

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

28% id,
66% cov

pheA SULKU_RS09630 Sulku_1920 WP_013460777.1: prephenate dehydratase
is similar to:
PaperBLAST

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

32% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

302417-303259 (frame +2) on NC_014762.1 Sulfuricurvum kujiense DSM 16994, complete sequence
is similar to:
PaperBLAST

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima
Also see hits to annotated proteins above

28% id,
73% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory