Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuricurvum kujiense DSM 16994 (GCF_000183725.1)

Found 51 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sulfuricurvum kujiense DSM 16994, or try another query

serB SULKU_RS09460 Sulku_1886 WP_013460743.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes

63% id,
100% cov

SERB_CAMJD / A7H590: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Campylobacter jejuni

54% id,
100% cov

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

47% id,
97% cov

More...

serA SULKU_RS04495 Sulku_0886 WP_013459749.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

28% id,
63% cov

SULKU_RS12065 Sulku_2398 WP_013461255.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

32% id,
44% cov

SULKU_RS00365 Sulku_0075 WP_013458940.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

32% id,
43% cov

dxs SULKU_RS09605 Sulku_1915 WP_013460772.1: 1-deoxy-D-xylulose-5-phosphate synthase
is similar to:
PaperBLAST

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

34% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory