Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuricurvum kujiense DSM 16994 (GCF_000183725.1)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sulfuricurvum kujiense DSM 16994, or try another query

acnB SULKU_RS05970 Sulku_1185 WP_013460045.1: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

acnB / P56418: aconitase (EC 4.2.1.3) from Helicobacter pylori

64% id,
100% cov

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

63% id,
100% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

61% id,
99% cov

More...

SULKU_RS12485 Sulku_2478 WP_013461334.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

26% id,
53% cov

D3GQL0: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

23% id,
54% cov

D3GQL2: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

23% id,
47% cov

More...

SULKU_RS04990 Sulku_0986 WP_013459846.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

33% id,
16% cov

ACON_CAEEL / P34455: Probable aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Caenorhabditis elegans

32% id,
16% cov

ACON_HUMAN / Q99798: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Homo sapiens
Q99798: aconitate hydratase (EC 4.2.1.3) from Homo sapiens

26% id,
20% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory