Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermovibrio ammonificans HB-1 (GCF_000185805.1)

Found 3 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuC' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermovibrio ammonificans HB-1, or try another query

leuC THEAM_RS01035 Theam_0201 WP_013536960.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

DVU2982: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

57% id,
100% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

33% id,
65% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

44% id,
32% cov

THEAM_RS05145 Theam_1024 WP_013537777.1: aconitate hydratase
is similar to:
PaperBLAST

DVU2982: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

37% id,
100% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

29% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory