Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermovibrio ammonificans HB-1 (GCF_000185805.1)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Thermovibrio ammonificans HB-1, or try another query

galE THEAM_RS03320 Theam_0654 WP_013537410.1: UDP-glucose 4-epimerase GalE
is similar to:		 PaperBLAST

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

 50% id,
97% cov

GALE_LACHE / Q7WTB1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Lactobacillus helveticus

 46% id,
97% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

 44% id,
97% cov

More...

THEAM_RS04055 Theam_0802 WP_013537555.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 45% id,
96% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 43% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 44% id,
96% cov

More...

rfbB THEAM_RS02940 Theam_0579 WP_013537337.1: dTDP-glucose 4,6-dehydratase
is similar to:		 PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 39% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 39% id,
98% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 36% id,
99% cov

More...

THEAM_RS00425 Theam_0084 WP_013536844.1: GDP-mannose 4,6-dehydratase
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 37% id,
100% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 35% id,
99% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 34% id,
98% cov

More...

rfaD THEAM_RS05365 Theam_1069 WP_013537822.1: ADP-glyceromanno-heptose 6-epimerase
is similar to:		 PaperBLAST

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 30% id,
100% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 30% id,
96% cov

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

 28% id,
96% cov

More...

rfbD THEAM_RS02945 Theam_0580 WP_013537338.1: dTDP-4-dehydrorhamnose reductase
is similar to:		 PaperBLAST

UGE2_ARATH / Q9T0A7: UDP-glucose 4-epimerase 2; AtUGE2; UDP-galactose 4-epimerase 2; EC 5.1.3.2 from Arabidopsis thaliana
Q9T0A7: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

 23% id,
52% cov

Q58IJ6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Hordeum vulgare

 22% id,
52% cov

UGE5_ARATH / Q9SN58: UDP-glucose 4-epimerase 5; AtUGE5; UDP-galactose 4-epimerase 5; EC 5.1.3.2 from Arabidopsis thaliana
Q9SN58: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

 21% id,
49% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory