Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermovibrio ammonificans HB-1 (GCF_000185805.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thermovibrio ammonificans HB-1, or try another query

carB THEAM_RS07915 Theam_1567 WP_013538311.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

48% id,
90% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

36% id,
36% cov

accC THEAM_RS07760 Theam_1539 WP_013538285.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

23% id,
32% cov

accC THEAM_RS01140 Theam_0222 WP_013536981.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

23% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory