Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermovibrio ammonificans HB-1 (GCF_000185805.1)

Found 1 curated entries in PaperBLAST's database that match 'glutamyl-tRNA(Gln) amidotransferase subunit E' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermovibrio ammonificans HB-1, or try another query

THEAM_RS02685 Theam_0524 WP_013537282.1: GatB/YqeY domain-containing protein
is similar to:
PaperBLAST

gatE / O26803: glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.7) from Methanothermobacter thermautotrophicus

27% id,
25% cov

gatB THEAM_RS05710 Theam_1138 WP_013537888.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
is similar to:
PaperBLAST

gatE / O26803: glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.7) from Methanothermobacter thermautotrophicus

47% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

475701-476225 (frame +3) on NC_014926.1 Thermovibrio ammonificans HB-1, complete sequence
is similar to:
PaperBLAST

gatE / O26803: glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.7) from Methanothermobacter thermautotrophicus
Also see hits to annotated proteins above

27% id,
30% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory