Curated BLAST for Genomes

 

Curated BLAST

Searching in Mesorhizobium ciceri biovar biserrulae WSM1271 (GCF_000185905.1)

Found 36 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Mesorhizobium ciceri biovar biserrulae WSM1271, or try another query

MESCI_RS03680 Mesci_0739 WP_013528604.1: malate synthase G
is similar to:
PaperBLAST

Psest_0354: Malate synthase G (EC 2.3.3.9) from Pseudomonas stutzeri

66% id,
100% cov

MASZ_MYCTA / A5U3K4: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
MASZ_MYCTO / P9WK16: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
MASZ_MYCTU / P9WK17: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
glcB / P9WK17: malate synthase G (EC 2.3.3.9) from Mycobacterium tuberculosis
P9WK17: malate synthase (EC 2.3.3.9) from Mycobacterium tuberculosis

63% id,
98% cov

MASZ_MYCLB / B8ZSN3: Malate synthase G; EC 2.3.3.9 from Mycobacterium leprae

62% id,
100% cov

More...

aceA MESCI_RS12170 Mesci_2416 WP_013530245.1: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

70% id,
44% cov

MESCI_RS04590 Mesci_0921 WP_024504050.1: CoA ester lyase
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

32% id,
88% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

31% id,
87% cov

MESCI_RS21055 Mesci_4195 WP_013531969.1: CoA ester lyase
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

30% id,
86% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

29% id,
86% cov

MESCI_RS28455 Mesci_5688 WP_013533411.1: CoA ester lyase
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

29% id,
86% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

29% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory