Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitratifractor salsuginis DSM 16511 (GCF_000186245.1)

Found 51 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Nitratifractor salsuginis DSM 16511, or try another query

serB NITSA_RS06385 Nitsa_1261 WP_281031946.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes

62% id,
98% cov

SERB_CAMJD / A7H590: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Campylobacter jejuni

49% id,
100% cov

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

48% id,
98% cov

More...

NITSA_RS04050 Nitsa_0794 WP_013553752.1: TIGR01458 family HAD-type hydrolase
is similar to:
PaperBLAST

ARAL_BACSU / P94526: Sugar-phosphatase AraL; Arabinose operon protein AraL; Phosphoserine phosphatase; EC 3.1.3.23; EC 3.1.3.3 from Bacillus subtilis

30% id,
93% cov

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

41% id,
28% cov

NITSA_RS10250 Nitsa_2034 WP_013554961.1: HAD-IIA family hydrolase
is similar to:
PaperBLAST

ARAL_BACSU / P94526: Sugar-phosphatase AraL; Arabinose operon protein AraL; Phosphoserine phosphatase; EC 3.1.3.23; EC 3.1.3.3 from Bacillus subtilis

31% id,
83% cov

NITSA_RS03025 Nitsa_0595 WP_013553559.1: phosphoglycolate phosphatase
is similar to:
PaperBLAST

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

26% id,
85% cov

serA NITSA_RS01700 Nitsa_0332 WP_013553299.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
62% cov

NITSA_RS05060 Nitsa_0994 WP_013553947.1: 2,3-diphosphoglycerate-dependent phosphoglycerate mutase
is similar to:
PaperBLAST

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

33% id,
53% cov

NITSA_RS01240 Nitsa_0240 WP_013553209.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
49% cov

NITSA_RS05770 Nitsa_1136 WP_013554080.1: HAD hydrolase family protein
is similar to:
PaperBLAST

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

30% id,
42% cov

B6YX36: phosphoserine phosphatase (EC 3.1.3.3) from Thermococcus onnurineus

35% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

336845-338476 (frame +2) on NC_014935.1 Nitratifractor salsuginis DSM 16511, complete sequence
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

29% id,
65% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory