Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitratifractor salsuginis DSM 16511 (GCF_000186245.1)

Found 11 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Nitratifractor salsuginis DSM 16511, or try another query

trpC NITSA_RS04090 Nitsa_0802 WP_013553760.1: indole-3-glycerol phosphate synthase TrpC
is similar to:
PaperBLAST

A1KJ27: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
A5U2W7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
P9WFX7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis

41% id,
94% cov

trpC / Q56319: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermotoga maritima

38% id,
98% cov

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

47% id,
81% cov

More...

NITSA_RS02920 Nitsa_0574 WP_013553538.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

43% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory