Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanobacterium lacus AL-21 (GCF_000191585.1)

Found 12 curated entries in PaperBLAST's database that match '3.5.4.19' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanobacterium lacus AL-21, or try another query

hisI METBO_RS03165 Metbo_0621 WP_013644223.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HIS3_METTH / O26347: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 from Methanothermobacter thermautotrophicus

68% id,
91% cov

HIS3_METVA / Q50837: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 from Methanococcus vannielii
Q50837: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) from Methanococcus vannielii

49% id,
88% cov

Q8YH95: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) from Brucella melitensis

53% id,
79% cov

More...

hisD METBO_RS06820 Metbo_1367 WP_048186596.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

40% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory