Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanobacterium lacus AL-21 (GCF_000191585.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methanobacterium lacus AL-21, or try another query

tpiA METBO_RS11890 Metbo_2401 WP_013645965.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_METBR / O74025: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanobacterium bryantii
O74025: triose-phosphate isomerase (EC 5.3.1.1) from Methanobacterium bryantii

74% id,
100% cov

Q12UK2: triose-phosphate isomerase (EC 5.3.1.1) from Methanococcoides burtonii

57% id,
99% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

56% id,
99% cov

More...

METBO_RS11885 Metbo_2400 WP_013645964.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

38% id,
61% cov

METBO_RS02925 Metbo_0573 WP_013644175.1: glutamate synthase-related protein
is similar to:
PaperBLAST

TPIS_THETK / Q8NKN9: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermoproteus tenax
Q8NKN9: triose-phosphate isomerase (EC 5.3.1.1) from Thermoproteus tenax

23% id,
84% cov

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

32% id,
26% cov

METBO_RS10755 Metbo_2177 WP_013645743.1: HisA/HisF family protein
is similar to:
PaperBLAST

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

36% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory