Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanobacterium lacus AL-21 (GCF_000191585.1)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methanobacterium lacus AL-21, or try another query

METBO_RS05895 Metbo_1176 WP_013644771.1: asparagine synthetase B
is similar to:		 PaperBLAST

ASNS_MOUSE / Q61024: Asparagine synthetase [glutamine-hydrolyzing]; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Mus musculus

 29% id,
87% cov

Asns / P49088: asparagine synthetase subunit (EC 6.3.5.4) from Rattus norvegicus

 29% id,
87% cov

ASNS_HUMAN / P08243: Asparagine synthetase [glutamine-hydrolyzing]; Cell cycle control protein TS11; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Homo sapiens
P08243: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Homo sapiens

 30% id,
84% cov

More...

METBO_RS04295 Metbo_0846 WP_013644447.1: lasso peptide isopeptide bond-forming cyclase
is similar to:		 PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

 29% id,
60% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

 31% id,
49% cov

ASNB_ECOLI / P22106: Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli
AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB: asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

 23% id,
45% cov

More...

purF METBO_RS10375 Metbo_2098 WP_013645668.1: amidophosphoribosyltransferase
is similar to:		 PaperBLAST

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

 25% id,
41% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

 34% id,
22% cov

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

 27% id,
24% cov

glmS METBO_RS10430 Metbo_2109 WP_013645679.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:		 PaperBLAST

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

 30% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory