Curated BLAST for Genomes

 

Curated BLAST

Searching in Ruegeria conchae TW15 (GCF_000192475.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.5.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Ruegeria conchae TW15, or try another query

G7G_RS0107420 WP_010440179.1: PQQ-dependent sugar dehydrogenase
is similar to:
PaperBLAST

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

31% id,
91% cov

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

32% id,
87% cov

DHGB_ACICA / P13650: Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus

29% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory