Curated BLAST for Genomes

 

Curated BLAST

Searching in Ruegeria conchae TW15 (GCF_000192475.1)

Found 73 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 53 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Ruegeria conchae TW15, or try another query

glyA G7G_RS0111845 WP_010441641.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

69% id,
99% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

65% id,
97% cov

L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida

60% id,
100% cov

More...

glyA G7G_RS0122205 WP_010443719.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

77% id,
58% cov

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

72% id,
59% cov

Q5M0B4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Streptococcus thermophilus

69% id,
60% cov

More...

G7G_RS0106265 WP_010439643.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

Q9UWT5: glycine hydroxymethyltransferase (EC 2.1.2.1) from Saccharolobus solfataricus

36% id,
90% cov

Q58992: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanocaldococcus jannaschii

34% id,
93% cov

Q5M0B4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Streptococcus thermophilus

32% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory