Curated BLAST for Genomes

 

Curated BLAST

Searching in Ruegeria conchae TW15 (GCF_000192475.1)

Found 11 curated entries in PaperBLAST's database that match '2.3.1.174' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Ruegeria conchae TW15, or try another query

pcaF G7G_RS0102215 WP_010437861.1: 3-oxoadipyl-CoA thiolase
is similar to:
PaperBLAST

HSERO_RS20660: bifunctional thiolase PaaJ: 3-oxo-5,6-dehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Herbaspirillum seropedicae

70% id,
100% cov

pcaF / Q0K4S3: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Cupriavidus necator

69% id,
100% cov

PAAJ_ECOLI / P0C7L2: 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; EC 2.3.1.174; EC 2.3.1.223 from Escherichia coli
YdbW / b1397: β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli
paaJ / P0C7L2: β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli

69% id,
100% cov

More...

G7G_RS0116445 WP_010442540.1: acetyl-CoA C-acyltransferase family protein
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

49% id,
100% cov

PCAF_PSEKB / Q8VPF1: Beta-ketoadipyl-CoA thiolase; 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 from Pseudomonas knackmussii

48% id,
99% cov

paaJ / Q845J8: β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp.

47% id,
100% cov

More...

G7G_RS0122070 WP_010443652.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

PCAF_PSEKB / Q8VPF1: Beta-ketoadipyl-CoA thiolase; 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 from Pseudomonas knackmussii

44% id,
99% cov

paaJ / Q845J8: β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp.

43% id,
100% cov

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

43% id,
100% cov

More...

G7G_RS0109505 WP_010440841.1: acetyl-CoA C-acyltransferase
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

43% id,
100% cov

PCAF_PSEKB / Q8VPF1: Beta-ketoadipyl-CoA thiolase; 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 from Pseudomonas knackmussii

42% id,
100% cov

Tfu_0875 / Q47RK4: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Thermobifida fusca

40% id,
100% cov

More...

G7G_RS0104525 WP_010438887.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

38% id,
100% cov

pcaF / Q0K4S3: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Cupriavidus necator

37% id,
100% cov

paaJ / Q845J8: β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp.

37% id,
100% cov

More...

fabF G7G_RS0114165 WP_010442090.1: beta-ketoacyl-ACP synthase II
is similar to:
PaperBLAST

H281DRAFT_05723: bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Paraburkholderia bryophila

44% id,
10% cov

BPHYT_RS17345: bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Burkholderia phytofirmans

43% id,
10% cov

pcaF / Q0K4S3: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Cupriavidus necator

45% id,
10% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory