Curated BLAST for Genomes

 

Curated BLAST

Searching in Ruegeria conchae TW15 (GCF_000192475.1)

Found 8 curated entries in PaperBLAST's database that match '4.1.1.77' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Ruegeria conchae TW15, or try another query

hpaH G7G_RS0111655 WP_010441603.1: 2-oxo-hept-4-ene-1,7-dioate hydratase
is similar to:
PaperBLAST

Q1XGK3: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas putida

37% id,
97% cov

xylI / P49155: 4-oxalocrotonate decarboxylase subunit (EC 4.1.1.77) from Pseudomonas putida

37% id,
97% cov

praD / C4TP06: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Paenibacillus sp.

35% id,
95% cov

More...

G7G_RS0121215 WP_010443489.1: fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

nbaG / Q83V28: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas fluorescens

31% id,
91% cov

AMNE_PSESP / Q9KWS3: 4-oxalocrotonate decarboxylase; EC 4.1.1.77 from Pseudomonas sp.
amnE / Q9KWS3: 4-oxalocrotonate decarboxylase monomer (EC 4.1.1.77) from Pseudomonas sp.

30% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory