Curated BLAST for Genomes

 

Curated BLAST

Searching in Ruegeria conchae TW15 (GCF_000192475.1)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.2' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Ruegeria conchae TW15, or try another query

purB G7G_RS0114000 WP_010442059.1: adenylosuccinate lyase
is similar to:
PaperBLAST

RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) from Cupriavidus basilensis

30% id,
90% cov

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens

26% id,
95% cov

pcaB2 / Q2HNY9: 3-carboxymuconate lactonizing enzyme type 2 (EC 5.5.1.2) from Hydrogenophaga intermedia

25% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory