Curated BLAST for Genomes

 

Curated BLAST

Searching in Archaeoglobus veneficus SNP6 (GCF_000194625.1)

Found 3 curated entries in PaperBLAST's database that match '2.1.3.9' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Archaeoglobus veneficus SNP6, or try another query

argF ARCVE_RS06905 Arcve_1384 WP_013684049.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

32% id,
98% cov

pyrB ARCVE_RS05665 Arcve_1137 WP_013683809.1: aspartate carbamoyltransferase
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

26% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory