Curated BLAST for Genomes

 

Curated BLAST

Searching in Archaeoglobus veneficus SNP6 (GCF_000194625.1)

Found 32 curated entries in PaperBLAST's database that match '2.7.1.71' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Archaeoglobus veneficus SNP6, or try another query

ARCVE_RS09615 Arcve_1933 WP_013684580.1: shikimate kinase
is similar to:
PaperBLAST

AROK_METJA / Q58835: Shikimate kinase; SK; EC 2.7.1.71 from Methanocaldococcus jannaschii
aroK / Q58835: shikimate kinase (EC 2.7.1.71) from Methanocaldococcus jannaschii

37% id,
97% cov

mvk ARCVE_RS02955 Arcve_0599 WP_013683294.1: mevalonate kinase
is similar to:
PaperBLAST

AROK_METJA / Q58835: Shikimate kinase; SK; EC 2.7.1.71 from Methanocaldococcus jannaschii
aroK / Q58835: shikimate kinase (EC 2.7.1.71) from Methanocaldococcus jannaschii

22% id,
98% cov

aroA ARCVE_RS07000 Arcve_1404 WP_013684069.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

31% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory