Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 11 curated entries in PaperBLAST's database that match '1.1.1.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

fabG DESAC_RS02730 Desac_0551 WP_013705550.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
90% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
90% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
90% cov

DESAC_RS10170 Desac_2042 WP_013706980.1: alcohol dehydrogenase catalytic domain-containing protein
is similar to:
PaperBLAST

GLCDH_SACSO / O93715: Glucose 1-dehydrogenase; GDH; GlcDH; Aldose 1-dehydrogenase [NAD(P)(+)]; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.359; EC 1.1.1.120; EC 1.1.1.48 from Saccharolobus solfataricus

24% id,
92% cov

DESAC_RS01160 Desac_0237 WP_013705242.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense

22% id,
76% cov

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

27% id,
46% cov

DESAC_RS12155 Desac_2441 WP_013707371.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

GLCDH_SACSO / O93715: Glucose 1-dehydrogenase; GDH; GlcDH; Aldose 1-dehydrogenase [NAD(P)(+)]; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.359; EC 1.1.1.120; EC 1.1.1.48 from Saccharolobus solfataricus

33% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory