Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacca acetoxidans DSM 11109 (GCF_000195295.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfobacca acetoxidans DSM 11109, or try another query

DESAC_RS13370 Desac_2687 WP_013707611.1: prephenate dehydrogenase/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea

36% id,
86% cov

Ga0059261_2298: prephenate and/or arogenate dehydrogenase (EC 1.3.1.13) from Sphingomonas koreensis

37% id,
68% cov

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

31% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2961837-2962715 (frame +3) on NC_015388.1 Desulfobacca acetoxidans DSM 11109, complete sequence
is similar to:
PaperBLAST

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea
Also see hits to annotated proteins above

36% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory